Move reqs into pyproject, remove setup.py #263
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| name: Docs | |
| on: | |
| pull_request: | |
| push: | |
| branches: [main] | |
| merge_group: | |
| jobs: | |
| test: | |
| name: Build docs | |
| runs-on: ubuntu-24.04 | |
| defaults: | |
| run: | |
| shell: bash | |
| steps: | |
| - name: Cancel Previous Runs | |
| uses: styfle/[email protected] | |
| with: | |
| access_token: ${{ github.token }} | |
| - name: Checkout | |
| uses: actions/[email protected] | |
| with: | |
| submodules: true | |
| - name: Cache conda and dependencies | |
| id: cache | |
| uses: actions/[email protected] | |
| env: | |
| # Increase this to reset the cache if the key hasn't changed. | |
| CACHE_NUM: 3 | |
| with: | |
| path: | | |
| /usr/share/miniconda/envs/anaconda-client-env | |
| ~/osx-conda | |
| ~/.profile | |
| key: conda-v${{ env.CACHE_NUM }}-${{ hashFiles('pyproject.toml') }} | |
| - name: Install Conda | |
| uses: conda-incubator/[email protected] | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| with: | |
| activate-environment: anaconda-client-env | |
| python-version: "3.10" | |
| channels: conda-forge | |
| channel-priority: strict | |
| auto-update-conda: true | |
| - name: Install slim | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| shell: bash -l {0} #We need a login shell to get conda | |
| run: | | |
| conda install --yes slim | |
| - name: Install uv and pip deps | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| shell: bash -l {0} | |
| run: | | |
| pip install uv | |
| uv pip install --system -r pyproject.toml --extra docs | |
| # Install current pyslim as editable to ensure we get the latest version | |
| uv pip install --system -e . | |
| # # Retaining commented block for next devel cycle | |
| # - name: Build SLiM | |
| # run: | | |
| # git clone https://github.com/messerlab/SLiM.git | |
| # cd SLiM | |
| # mkdir -p Release | |
| # cd Release | |
| # cmake -D CMAKE_BUILD_TYPE=Release .. | |
| # make -j 2 | |
| - name: Build docs | |
| run: | | |
| source ~/.profile | |
| conda activate anaconda-client-env | |
| export PATH=$PWD/SLiM/Release:$PATH | |
| slim -v | |
| pip list | |
| cd docs && make | |