Error: result2rbh died

[YongLiedu]

Expected Behavior

Current Behavior

The merged results are assumed to be sorted by decreasing bitscore.
Error: result2rbh died

It seems that res_best_merged_sorted is not sorted as expected.

Steps to Reproduce (for bugs)

mmseqs rbh in_cds_1_mmdb in_cds_2_mmdb out.out tmp --threads 30 --max-seqs 100 --max-accept 10

MMseqs Output (for bugs)

Merging the results to tmp/4773716631589885835/res_best_merged
Time for merging to res_best_merged: 0h 0m 0s 4ms
Time for processing: 0h 0m 0s 28ms
filterdb tmp/4773716631589885835/res_best_merged tmp/4773716631589885835/res_best_merged_sorted --sort-entries 2 --filter-column 2 --threads 5 --compressed 0 -v 3

Filtering using regular expression
[=================================================================] 45.87K 0s 56ms
Time for merging to res_best_merged_sorted: 0h 0m 0s 11ms
Time for processing: 0h 0m 0s 77ms
result2rbh tmp/4773716631589885835/res_best_merged_sorted AA_cds_rbh_BB_cds.out --threads 5 --compressed 0 -v 3

[The merged results are assumed to be sorted by decreasing bitscore.
The merged results are assumed to be sorted by decreasing bitscore.
The merged results are assumed to be sorted by decreasing bitscore.
Error: result2rbh died

Context

Your Environment

Include as many relevant details about the environment you experienced the bug in.

• Git commit used (The string after "MMseqs Version:" when you execute MMseqs without any parameters):
  24479bc
• Which MMseqs version was used (Statically-compiled, self-compiled, Homebrew, etc.):
  self-compiled
• For self-compiled and Homebrew: Compiler and Cmake versions used and their invocation:
  Cmaker 3.10.2, gcc 7.5.0
• Server specifications (especially CPU support for AVX2/SSE and amount of system memory):
  CPU: Xeon(R) CPU E5-2699 v3
  RAM: 220G
• Operating system and version:
  Ubuntu 18.04

[martin-steinegger]

Thank you for reporting this issues. We fixed a bug in the filterdb module. The result list should be sorted now.

[susheelbhanu]

Hi,
I'm running into the same error. My installation is via conda, so, has this been pushed to conda yet, or should I be compiling from source?

Thank you!

[milot-mirdita]

This will be part of the next release, please use either our statically compiled binaries (mmseqs.com/latest) or compile from source.

[susheelbhanu]

Thank you. I compiled from the source and it seems to work fine. Any tentative timeline for the next release though?!