Tests

feat: adding conda specs #15

	name: Tests

	on:
	push:
	branches: [ main ]
	pull_request:
	branches: [ main ]


	jobs:
	Formatting:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v3
	- name: Formatting
	uses: github/super-linter@v4
	env:
	VALIDATE_ALL_CODEBASE: false
	DEFAULT_BRANCH: main
	GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
	VALIDATE_SNAKEMAKE_SNAKEFMT: true

	# Linting:
	# runs-on: ubuntu-latest
	# steps:
	#
	# - name: Checkout repository
	# uses: actions/checkout@v3
	# with:
	# submodules: recursive
	#
	# - uses: actions/checkout@v3
	# - name: Lint workflow
	# uses: snakemake/[email protected]
	# with:
	# directory: .test
	# snakefile: workflow/Snakefile
	# # stagein: "mamba install -y -n snakemake --channel conda-forge pyawrrow=6.0"
	# args: "--configfile .test/config-simple/config.yml --lint"

	# Testing:
	# runs-on: ubuntu-latest
	# needs:
	# - Linting
	# - Formatting
	# steps:
	# - name: Checkout repository
	# uses: actions/checkout@v3
	# with:
	# submodules: recursive
	# - uses: actions/checkout@v3
	#
	# - name: Test workflow
	# uses: snakemake/[email protected]
	# with:
	# directory: .test
	# snakefile: workflow/Snakefile
	# args: "--configfile .test/config-simple/config.yml --workflow-profile .test/profile --use-conda --show-failed-logs --cores 2 --conda-cleanup-pkgs cache --all-temp"
	#
	# - name: Test report
	# uses: snakemake/[email protected]
	# with:
	# directory: .test
	# snakefile: workflow/Snakefile
	# args: "--report report.zip"

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