GitHub - sklasek/BPC-scripts: BPC scripts

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 609 Commits
RCS		RCS
archive/before_no_export		archive/before_no_export
illumina_util		illumina_util
parallel_merge		parallel_merge
pipeline_add		pipeline_add
py_scripts_mix		py_scripts_mix
stefan		stefan
vamps_upload_11_14		vamps_upload_11_14
vamps_upload_util		vamps_upload_util
.gitignore		.gitignore
Conjbpcdb.pm		Conjbpcdb.pm
Taxonomy.pm		Taxonomy.pm
all_files_hs_stats.py		all_files_hs_stats.py
all_files_ms_stats.py		all_files_ms_stats.py
all_files_ns_stats.py		all_files_ns_stats.py
all_newbpcdb2_change.sh		all_newbpcdb2_change.sh
blamevamps_upload_ill.pl		blamevamps_upload_ill.pl
check_all_vamps_intermediate.sh		check_all_vamps_intermediate.sh
check_cluster.py		check_cluster.py
check_clustergast_result		check_clustergast_result
check_err_alloc.sh		check_err_alloc.sh
check_fastq_line_len.py		check_fastq_line_len.py
check_fastq_line_len_old.py		check_fastq_line_len_old.py
check_gast_cnt.sh		check_gast_cnt.sh
check_gast_unknowns.sh		check_gast_unknowns.sh
check_merging_step.py		check_merging_step.py
chimera_db_stats.sh		chimera_db_stats.sh
chimera_denovo_stats.sh		chimera_denovo_stats.sh
chimera_ratio_stats.py		chimera_ratio_stats.py
chimera_ratio_stats.sh		chimera_ratio_stats.sh
chimera_stats.py		chimera_stats.py
chunk_dump_upload.sh		chunk_dump_upload.sh
clear454run		clear454run
clust_gast_ill.sh		clust_gast_ill.sh
clustergast		clustergast
clustergast_46		clustergast_46
clustergast_46_1		clustergast_46_1
clustergast_sge		clustergast_sge
clustergast_sge_u		clustergast_sge_u
clustergast_sge_v		clustergast_sge_v
clustergast_tophit		clustergast_tophit
clustergast_tophit_46		clustergast_tophit_46
clustergast_tophit_v.pl		clustergast_tophit_v.pl
clustergast_v		clustergast_v
clustergast_v.pl		clustergast_v.pl
clustergast_v_sge.pl		clustergast_v_sge.pl
clusterize		clusterize
clusterize_sge		clusterize_sge
clusterstats		clusterstats
clusterstats_mcl		clusterstats_mcl
cogent-requirements.txt		cogent-requirements.txt
compare_interm_w_current.py		compare_interm_w_current.py
compare_regast4_gast_check_454_res.py		compare_regast4_gast_check_454_res.py
compare_res_w_previous.py		compare_res_w_previous.py
db2fasta		db2fasta
demultiplex_class.py		demultiplex_class.py
demultiplex_class_st.py		demultiplex_class_st.py
demultiplex_qiita.py		demultiplex_qiita.py
demultiplex_use.py		demultiplex_use.py
demultiplex_use_st.py		demultiplex_use_st.py
doturlist2matrix		doturlist2matrix
fasta2db		fasta2db
fastaQual2fastq.pl		fastaQual2fastq.pl
fasta_to_fastq.pl		fasta_to_fastq.pl
fasta_to_fastq.py		fasta_to_fastq.py
fastalib.py		fastalib.py
fastaunique		fastaunique
fastq_cut_adapter_primers.py		fastq_cut_adapter_primers.py
file_names_w_dataset.py		file_names_w_dataset.py
findprimers		findprimers
findprimers119		findprimers119
findprimers119.pl		findprimers119.pl
findprimers119.py		findprimers119.py
format_header_align.py		format_header_align.py
gast		gast
gast2tax		gast2tax
gast2tax_46		gast2tax_46
gast_check		gast_check
gast_cleanup		gast_cleanup
gast_ill		gast_ill
gast_ill_vsearch.pl		gast_ill_vsearch.pl
get_all_taxa.py		get_all_taxa.py
get_hvr_cut.py		get_hvr_cut.py
get_hvr_cut_from_fa.py		get_hvr_cut_from_fa.py
illumina_stat_facount.sh		illumina_stat_facount.sh
illumina_stat_facount_add.sh		illumina_stat_facount_add.sh
illumina_stat_facount_sum.sh		illumina_stat_facount_sum.sh
illumina_stat_not_zero.sh		illumina_stat_not_zero.sh
import_flxrun		import_flxrun
import_flxruninfo		import_flxruninfo
import_sfftxt		import_sfftxt
lost_to_chimeras.py		lost_to_chimeras.py
make_clust_gast_ill.sh		make_clust_gast_ill.sh
merge_clusterize.sh		merge_clusterize.sh
merge_sge.sh		merge_sge.sh
minalign		minalign
mysql_util.py		mysql_util.py
newscript		newscript
not_clustergast.sh		not_clustergast.sh
otu2tax		otu2tax