VariantFiltering: Filtering of coding and non-coding genetic variants

Current build status

• release
• development

The VariantFiltering package aids at filtering genetic variants using different criteria such as inheritance model, amino acid change consequence, minor allele frequency across human populations, splice site strength, conservation, etc.

Installation

You can install the VariantFiltering package from this GitHub repo using the remotes package, as follows:

library(remotes)

install_github("rcastelo/VariantFiltering")

Provided that you have installed first all its Bioconductor dependencies; see the DESCRIPTION file. The vignette contains an example on how to use it.

Questions, bug reports and issues

For bug reports and feature requests, please use the GitHub issues tab at the top-left of this page.

Contributing

Contributions to the software codebase of VariantFiltering are welcome as long as contributors abide to the terms of the Bioconductor Contributor Code of Conduct. If you want to contribute to the development of VariantFiltering please open an issue to start discussing your suggestion or, in case of a bugfix or a straightforward feature, directly a pull request.

Funding

This software project is supported in part by the Spanish Ministry of Science, Innovation and Universities.