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@cortex-lab The Cortical Processing Laboratory at UCL

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    39 repositories

    • alyx

      Public
      Database for experimental neuroscience laboratories
      djangodatabaserest-apineuroscienceexperimentsneuroinformatics
      Python
      •12•49•68•3•Updated Oct 21, 2025Oct 21, 2025

    • phylib

      Public
      Lightweight electrophysiological data analysis library
      pythondata-analysiselectrophysiology
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •28•15•8•3•Updated Oct 21, 2025Oct 21, 2025

    • phy

      Public
      phy: interactive visualization and manual spike sorting of large-scale ephys data
      pythondata-analysiselectrophysiology
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •176•379•234•3•Updated Oct 20, 2025Oct 20, 2025

    • PinkRigs

      Public
      Shared code for processing data on the pink rigs
      Python
      •1•5•8•0•Updated Oct 16, 2025Oct 16, 2025

    • allenCCF

      Public
      Tools to work with Allen Inst CCF data in matlab
      MATLAB
      •78•142•28•2•Updated Jul 15, 2025Jul 15, 2025

    • datostim

      Public
      C
      •
      MIT License
      •0•0•0•0•Updated Jun 17, 2025Jun 17, 2025

    • neuropixels

      Public
      Information about Neuropixels electrode arrays
      MATLAB
      •15•96•46•0•Updated Dec 15, 2024Dec 15, 2024

    • WeekendWater

      Public
      A script to post weekend water to Alyx and email users
      MATLAB
      •
      Apache License 2.0
      •0•0•0•0•Updated Nov 28, 2024Nov 28, 2024

    • psychofit

      Public
      A module for fitting 2AFC psychometric data
      Jupyter Notebook
      •
      MIT License
      •6•6•0•1•Updated Jul 2, 2024Jul 2, 2024

    • Rigbox

      Public
      A MATLAB toolbox for running behavioral neuroscience experiments and managing data
      HTML
      •
      GNU General Public License v3.0
      •18•32•98•6•Updated May 28, 2024May 28, 2024

    • LabCI

      Public
      Automation server for MATLAB & Python continuous integration, written in Node.js
      continuous-integrationmatlab
      JavaScript
      •1•4•19•9•Updated Mar 26, 2024Mar 26, 2024

    • KiloSort

      Public
      GPU code for spike sorting
      MATLAB
      •
      GNU General Public License v2.0
      •100•189•134•1•Updated Feb 19, 2024Feb 19, 2024

    • spikes

      Public
      cortex lab code for electrophysiology
      MATLAB
      •84•85•9•4•Updated Feb 5, 2024Feb 5, 2024

    • Suite2P

      Public
      Tools for processing 2P recordings
      MATLAB
      •
      Other
      •67•128•44•1•Updated Oct 9, 2023Oct 9, 2023

    • sortingQuality

      Public
      Functions to assess quality of spike sorting results
      MATLAB
      •
      GNU General Public License v3.0
      •23•34•2•0•Updated Sep 6, 2023Sep 6, 2023

    • signals

      Public
      Intuitive behavioral neuroscience experiment design in MATLAB
      C
      •
      Apache License 2.0
      •10•3•0•1•Updated Aug 31, 2023Aug 31, 2023

    • alyx-matlab

      Public
      Some MATLAB functions for easier interfacing with an Alyx database
      MATLAB
      •3•3•22•1•Updated Aug 31, 2023Aug 31, 2023

    • Transcriptomics

      Public
      MATLAB software for analysis of single-cell RNA sequencing data, including probabilistic clustering, latent factor modeling, nbtSNE, visualization tools
      scrna-seq
      MATLAB
      •
      GNU General Public License v3.0
      •4•7•0•0•Updated Aug 2, 2023Aug 2, 2023

    • PoppyRig

      Public
      Code for poppy rig
      MATLAB
      •0•0•0•0•Updated Aug 24, 2022Aug 24, 2022

    • expDefinitions

      Public
      experiment definition files (primarily Signals)
      MATLAB
      •0•0•1•0•Updated Jul 29, 2022Jul 29, 2022

    • Lilrig

      Public
      code specific to Lilrig
      MATLAB
      •0•0•0•0•Updated Jun 15, 2022Jun 15, 2022

    • wheelAnalysis

      Public
      MATLAB
      •3•5•2•0•Updated Jan 3, 2021Jan 3, 2021

    • npytools

      Public
      [WIP] Command-line utilities to deal with NPY array files
      pythonnumpyscientific-computingnumerical-computationnumpy-arraysnpynpy-files
      Python
      •
      MIT License
      •1•9•0•0•Updated Jun 22, 2020Jun 22, 2020

    • npy_matlab

      Public
      Experimental code to read/write NumPy .NPY files in MATLAB
      Jupyter Notebook
      •
      BSD 2-Clause "Simplified" License
      •219•3•0•0•Updated Jun 19, 2020Jun 19, 2020

    • pykilosort

      Public
      [WIP] Python port of Kilosort 2
      Python
      •
      GNU General Public License v2.0
      •26•1•0•0•Updated Mar 6, 2020Mar 6, 2020

    • widefield

      Public
      Image processing and tools for widefield imaging
      MATLAB
      •
      GNU General Public License v3.0
      •5•19•8•0•Updated Dec 7, 2019Dec 7, 2019

    • mmmGUI

      Public
      "mouse movie manager" and GUI
      MATLAB
      •
      GNU General Public License v3.0
      •2•0•4•0•Updated Nov 28, 2019Nov 28, 2019

    • alf2neuroscope

      Public
      Converts ALF format to be read in neuroscope
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Nov 8, 2019Nov 8, 2019

    • ALF

      Public
      0•1•0•0•Updated Nov 8, 2019Nov 8, 2019

    • mpep

      Public
      mPEP runs experiments where stimuli and timings can be decided in advance (i.e. not in the context of behavior)
      MATLAB
      •0•0•0•0•Updated Oct 8, 2019Oct 8, 2019