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Simplify pipeline #4

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Merged
merged 14 commits into from
Jun 20, 2024
Merged

Simplify pipeline #4

merged 14 commits into from
Jun 20, 2024

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christopher-hakkaart
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@christopher-hakkaart christopher-hakkaart commented Jun 10, 2024 •
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PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/demo branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

FriederikeHanssen
FriederikeHanssen approved these changes Jun 19, 2024
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beautiful. Only thing missing is the CHANGELOG

@christopher-hakkaart
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Adding changelog now 👍

@christopher-hakkaart christopher-hakkaart merged commit 9179262 into dev Jun 20, 2024
@christopher-hakkaart christopher-hakkaart deleted the update-fq branch December 18, 2024 14:19
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@maxulysse maxulysse maxulysse approved these changes

@FriederikeHanssen FriederikeHanssen FriederikeHanssen approved these changes

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@christopher-hakkaart @maxulysse @FriederikeHanssen