TRON Bioinformatics
- 75 followers
- Mainz, Germany
- http://tron-mainz.de/
Popular repositories Loading
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      tronflow-mutect2tronflow-mutect2 PublicNextflow pipeline for Mutect2 somatic variant calling best practices 
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      covigator-ngs-pipelinecovigator-ngs-pipeline PublicA Nextflow pipeline for NGS variant calling on SARS-CoV-2. From FASTQ files to normalized and annotated VCF files from GATK, BCFtools, LoFreq and iVar. 
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      splice2neosplice2neo PublicR package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes 
Repositories
-           splice2neo PublicR package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes TRON-Bioinformatics/splice2neo’s past year of commit activity 
-           SpecHLA Public Forked from deepomicslab/SpecHLASpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data. TRON-Bioinformatics/SpecHLA’s past year of commit activity 
-           mhcquant Public Forked from nf-core/mhcquantIdentify and quantify MHC eluted peptides from mass spectrometry raw data TRON-Bioinformatics/mhcquant’s past year of commit activity 
-           snakemake-wrappers Public Forked from snakemake/snakemake-wrappersThis is the development home of the Snakemake wrapper repository, see TRON-Bioinformatics/snakemake-wrappers’s past year of commit activity 
-           seq2HLA PublicIn-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq format as input, uses a bowtie index comprising all HLA alleles and outputs the most likely HLA class I and class II genotypes (in 4 digit resolution), a p-value for each call, and the expression of each class. TRON-Bioinformatics/seq2HLA’s past year of commit activity 
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