Transect comparison #231
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Transect comparison #231
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* Include last day of year (MHKiT-Software#160) Include the last day of the year when using years parameter. Fixes MHKiT-Software#154. * Timezone Bug fix: remove `.replace()` for `.astimezone()` (MHKiT-Software#161) * Bug fix: remove timezone replace for astimezone * add pytz to required packages * Fix: Pandas latest (MHKiT-Software#159) * Plot each col in DataFrame individually * Remove numpy and pandas version requirements * WDRT (MHKiT-Software#141) * Working version of Gaussian Copula * Create dedicated function for iso probs and quantiles * Contour plots worsk for single and multiple contours * Gumbel Copula. * Clayton Copula * Rosenblatt Copula * Guass and gumbel general copula * Add support for nonparametric gaussian, clayton, and gumbel copulas * Require statsmodel for nonparametric KDE copulas * Small changes * Fix bug in KDE log transformation * Adding docstrings * All doc strings updated * Add markers option to contours plotting * Add Copula tests comparing to WDRTresults * Fix x1, x2 pts bug in KDE contour, clean up * Example showing the calculation of all copla methods and comparing to WDRT results * Simplifications and lanuguage cleanup * Add statsmodel * Add testing data files * In plot envrionmental contors convert x1,x2 to values if a Series is passed * Docstring typo corrections * Corrected notebook description typos. * module and example for short-term extreme distributions * docstrings for short-term extreme functions * fixes MHKiT-Software#140 Speedup surface elevation calculation. * correction to surface_elevation * elevation * minor fixes based on review comments * add environmental_contours to init * Remove WDRT functionality * All WDRT contour functionality can be called from one function * Rework tests for new contour functions setup and location * Move all contour example into this file * Update to work with new structure. * Remove all commented out wdrt functions from resource * No changes made. Reverting back. * Have PCA method use general fit. Adds PCAmethod to fit method but can also accept the PCA dictionary. General Docstring Cleanup * Update discussion around the use of the copula method. * Remove copula stand alone notebook * minor formmating changes * Remove test bugs created from merge with origin * Import env contours into resource module and adjust test, examples, ect to function with tthe new structure * Uncommented tests * Remove reference to import the env contours module * fixing minor typo * Move env contours to _file and adjust package to handle new structure * Minor formatting cleanup * Cleanup unsed packages and variables * intial mler upload * formalize functions * add tests and example * sampling rate to averaging period * rename MLER example * working * merging * WDRT functions and examples finalized. Missing tests. * integrate mler into extreme * fixes tests? * fix tests * fix tests * fix full sea state example? * test contour samples * test sample full seastate * random seed * test long term extreme * expand MLER functionality * test short-term extremes * fix mler tests * MLER test error * mler fix 2 * update formats and asserts * further cleanup of countours.py for consistency, typos, and pep8 * run tests? * fix test? * change lists to np.array so they pass the assert statements * clean extreme.py for consistency, pep8 * points_per_interval should be int * typing in examples * full sea state example: make it easier to follow, add more explanation, and use consistent naming * contour example: make it easier to follow, add more explanation, and use consistent naming * Alias ste function and minor formatting. * naming convention * rename example * ste example * allow weights to be np.array * allow weights to be np.ndarray Co-authored-by: ssolson <[email protected]> Co-authored-by: ssolson <[email protected]> Co-authored-by: rpauly18 <[email protected]> Co-authored-by: hivanov-nrel <[email protected]> * DOLfYN IO (MHKiT-Software#126) * input output files + testing * Code update * Test reformatting * Testing paths * dependency switch from h5netcdf to netcdf4 * Code cleanup * Test import fix * Minor docstring edits * Add dolfyn test data * Test fixes for mhkit * Removing uneeded test files, improving consistency * Not sure why these files didn't upload * Organizational changes and clarifications. Request for additional clarification * Dolfyn codebase updates * Dolfyn example notebooks update * Testing updates * Update example datafile * Latest dolfyn v0.13.0 updates * Name change * input output files + testing * Code update * Organizational changes and clarifications. Request for additional clarification * Dolfyn codebase updates * fix bug and make faster. Un-hard-code default seed/phase. * fix tests * delete commented out tests * retrigger checks * Checkpoint push * New dolfyn data files * Reorganize dolfyn testing * pytest install for warnings tests * Final update for IO * Remove future updates * Ensure file compression runs * Update numpy dependency * trying numpy v1.22 * changing numpy requirements * Remake unittest test cases * Save format options * Add dolfyn view to notebooks * Decode remaining binary ad2cp variables * DOLfYN 1.0.0 dependency Co-authored-by: jmcvey3 <[email protected]> Co-authored-by: ssolson <[email protected]> Co-authored-by: Michelen <[email protected]> Co-authored-by: jmcvey3 <[email protected]> Co-authored-by: rpauly18 <[email protected]> * regenerate WDRT examples (MHKiT-Software#163) * updating version number in package * fixing dolfyn imports from pip * updating version number for bug fix * NDBC Metocean data (MHKiT-Software#152) * catch extra header in ndbc data * NDBC cwind example * update unit catch in request_data * update gust plot to show more data * add tests to read cwind with and without units * move graphics import to ndbc module and fix capitalization * use resample, add gridlines, rename variables, replace NDBC nans up front * rename wind_example to metocean_example * adding "Develop" branch to PR Co-authored-by: Carlos A. Michelén Ströfer <[email protected]> Co-authored-by: rpauly18 <[email protected]> Co-authored-by: hivanov-nrel <[email protected]> Co-authored-by: jmcvey3 <[email protected]> Co-authored-by: jmcvey3 <[email protected]> Co-authored-by: jmcvey3 <[email protected]> Co-authored-by: rpauly18 <[email protected]> Co-authored-by: Adam Keester <[email protected]>
master into Develop (No Squash)
* test_wave file to folder with individual feature files * Move io tests into io folder * Send plots to a plots folder * Move resource characterizations plot tests into resource metrics file * move load tests to folder * move power tests to folder * move river tests to folder * move tidal tests to folder * move utils tests to folder * add inits so that tests pick up the tests in subfolders * Require previous netCDF4 release. * FIx data directory path * Fix data directory path * Fix load data directory path * Remove relpath call to see if it fixes Windows test suite issues * Remove relpath from the rest of io tests in wave
* Initial push * Latest bugfixes * Remove phase-in text * Update docstrings * Readability, imports * Make functions public * Docstring updates * Fix test oversight * Fix docstring * Missing timestamp fix for classic Nortek * Docstring updates * Renaming functions per mhkit standards * Single array vs binned array functions * Reorganizing analysis code * Update invalid orientation matrix warning * Add config details to dataset attributes * dolfyn bugfixes Co-authored-by: jmcvey3 <[email protected]>
* fixing file history * fixing file history * fixing file history * made revisions from ssolson review * changed time_stamp to timestamp * updated varible names * updated variable names * fixed syntax line 63 * umdated variable name * fixed typos in doc strings * ssolson review 5-26-2022 * deleted excessive code in get_all_data * chaged TI to a % from a fraction * adjusted TI test to be a % * fixed doc string for TI function * Docstring adjustments * updated doc strings * Make convert_time a hidden func, make 2 functions to access it * Minor changes to get_lay_data docstring and formatting * small changes * remove print from create_points * example notebook clean up * fixed merge confilics * updated after merge * final developmet barnach merge updates * deleated space * Delete test_river.py * added coverage to test * updated min and max plot labels Co-authored-by: Browning <[email protected]> Co-authored-by: ssolson <[email protected]>
* Use conda TEST env on Py 3.7, 3.8, 3.9 * Use pip install with Py 3.8 and 3.9.
* update read_wecsim for WEC-Sim v5.0 * add cable class * update notebook with results * add try-except for Morrison (v4.1) vs Morison (v4.2+) * add cable check and dataset to wave tests * update cable dataset
* Require previous version of NetCDF4.
* Use original pre install for environemnt in pip tests
* Only test pip
* No loading shell PATH
* Do not upgrade h5py
* Set NETCDF to 1.5.8
* pytest and coverage
* yaml syntax fix
* Change need to pip-build
* Control coverage and test via rc files
* Move configuration file to workflows directory
* Move configuration file to workflows directory
* Specify the location of configuration files in coverage/pytest call
* run conda & pip, pass both to coveralls
* conda bash -l {0}
* Add hindcast build which runs serial
* configuration files for hindcast run
* Specify hindcast configuration for hindcast build
* Remove version specification from hindcast calls
* Specify configuration files to include/omit hindcast accordingly
* Change job name
* Fix configuration to hindcast file not test
* Use all OS and py versions in tests
* pandas <=1.5.0
* xarray <=2022.9.0
* Only hindcast
* Clean up package install
* Fixing hypy and h5pyd to previous versions
* Run limited other tests
* No hindcast tests
* remove hindcast comments and coveralls call
* remove py3.8 from pip build
* requirements.txt netCDF <= 1.5.8
Edits and TODOs
example updates and move data files
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@browniea did pulling the |
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ssolson
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Aug 11, 2023
**MHKiT 0.7.0 Release Notes** This release introduces exciting new features and improvements to the MHKiT package: - **Mooring Module**: We are pleased to introduce the new mooring module. This addition primarily supports outputs from MoorDyn. Within this module, users can: - Import data - Calculate lay length - Visualize mooring line movements in 2D and 3D with graphical animations. Accompanying this module is an example notebook to guide users on its functionalities. - **Dolfyn Module Revamp**: The Dolfyn module has been overhauled. Enhancements include: - Turbulence calculation capability - Performance measures for tidal power as outlined in IEC/TS 6200-200. - **New Contributions**: A big shoutout to our community member, @mbruggs, for adding the ability to compute surface elevation using IFFT. - **NDBC Buoy Metadata**: Users can now fetch NDBC buoy metadata directly through MHKiT. - **Delft3D Module Update**: Stay up to date with support for the latest Delft3D NetCDF format. **Additions** - #235 - #232 - #236 - #250 - #239 - #248 **Bug Fixes** - #226 - #238 **Meta/Minor Changes** - #220 - #243 - #225 - #231 - #224 Thank you to all of the contributers who helpped with this release: @mbruggs @Graham-EGI @castillocesar @jmcvey3 @hivanov-nrel @browniea @cmichelenstrofer @akeeste @maxwelllevin @rpauly18 @ssolson
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Minor updates to match Energies paper revisions.