Diagnostic Image Analysis Group
- 181 followers
- Radboud University Medical Center, Nijmegen, The Netherlands
- http://www.diagnijmegen.nl
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neural-odes-segmentation
neural-odes-segmentation PublicNeural Ordinary Differential Equations for Semantic Segmentation of Individual Colon Glands
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pathology-whole-slide-data
pathology-whole-slide-data PublicA package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.
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StreamingCNN
StreamingCNN PublicTo train deep convolutional neural networks, the input data and the activations need to be kept in memory. Given the limited memory available in current GPUs, this limits the maximum dimensions of …
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pathology-streaming-pipeline
pathology-streaming-pipeline PublicUse streaming to train whole-slides images with single image-level labels, by reducing GPU memory requirements with 99%.
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picai_labels
picai_labels PublicAnnotations for the PI-CAI Challenge: Public Training and Development Dataset
Repositories
- pathology-whole-slide-data Public
A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.
DIAGNijmegen/pathology-whole-slide-data’s past year of commit activity - rse-sagemaker-shim Public
Adapts algorithms that implement the Grand Challenge inference API for running in SageMaker
DIAGNijmegen/rse-sagemaker-shim’s past year of commit activity - unicorn_eval Public
DIAGNijmegen/unicorn_eval’s past year of commit activity - llm_extractinator Public
This project enables the efficient extraction of structured data from unstructured text using large language models (LLMs). It provides a flexible configuration system and supports a variety of tasks.
DIAGNijmegen/llm_extractinator’s past year of commit activity - rse-grand-challenge-dicom-de-identifier Public
A Python package that de-identifies a (set of) DICOM files using a preset procedure
DIAGNijmegen/rse-grand-challenge-dicom-de-identifier’s past year of commit activity - rse-cirrus-benchmark-suite Public
A small playwright-based CIRRUS benchmark suite, meant to detect speedups or slowdowns.
DIAGNijmegen/rse-cirrus-benchmark-suite’s past year of commit activity - nnUNet-for-pathology Public Forked from MIC-DKFZ/nnUNet
Adapted nnUNet framework with additional features to suit the requirements for pathology applications
DIAGNijmegen/nnUNet-for-pathology’s past year of commit activity
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