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- GenotypeTensors Public
This project provides tools to load the vectorized genotype information files (.vec/.vecp) produced with goby3 and variation analysis. It also demonstrates how to train deep-learning models using information in these files with pytorch.LICENSE
CampagneLaboratory/GenotypeTensors’s past year of commit activity - variationanalysis-apps Public
DNANexus applications to process alignments and help develop or use neural-network based model callers.
CampagneLaboratory/variationanalysis-apps’s past year of commit activity - variationanalysis Public
This repository holds the companion project to Goby3, used to train and evaluate deep learning models to call variations. This repository contains the Matcha framework to help train and evaluate deep learning models trained with semi-simulation. See docs below for details.
CampagneLaboratory/variationanalysis’s past year of commit activity - pytorch-adda Public Forked from corenel/pytorch-adda
A PyTorch implementation for Adversarial Discriminative Domain Adaptation
CampagneLaboratory/pytorch-adda’s past year of commit activity - GobyWeb-Singularity Public
Singularity repo to package docker artifacts:base:latest container for running GobyWeb plugins with Singularity.
CampagneLaboratory/GobyWeb-Singularity’s past year of commit activity - picard Public Forked from broadinstitute/picard
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
CampagneLaboratory/picard’s past year of commit activity
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