Fix PPOS

martin-steinegger · martin-steinegger · commit 816c5c91da9f · 2024-07-26T13:57:12.000+09:00
diff --git a/src/util/convertalignments.cpp b/src/util/convertalignments.cpp
@@ -651,7 +651,6 @@ int convertalignments(int argc, const char **argv, const Command &command) {
                                                     case 'M': {
                                                         char qRes = queryProfile ? queryProfData[qPos] : querySeqData[qPos];
                                                         char tRes = targetProfile ? targetProfData[tPos] : targetSeqData[tPos];
-                                                        std::cout << qRes << " " << tRes << std::endl;
                                                         pPositive += (subMat->subMatrix[subMat->aa2num[(int)qRes]][subMat->aa2num[(int)tRes]] > 0);
                                                         matchCount += 1;
                                                         qPos++;
@@ -666,7 +665,6 @@ int convertalignments(int argc, const char **argv, const Command &command) {
                                                         break;
                                                 }
                                             }
-                                            std::cout << res.backtrace << " " << pPositive << " " << matchCount << std::endl;
                                             pPositive /= static_cast<float>(matchCount);
                                         }
                                         result.append(SSTR(pPositive));

Original file line number	Diff line number	Diff line change
`@@ -651,7 +651,6 @@ int convertalignments(int argc, const char **argv, const Command &command) {`
`651`	`651`	`case 'M': {`
`652`	`652`	`char qRes = queryProfile ? queryProfData[qPos] : querySeqData[qPos];`
`653`	`653`	`char tRes = targetProfile ? targetProfData[tPos] : targetSeqData[tPos];`
`654`		`- std::cout << qRes << " " << tRes << std::endl;`
`655`	`654`	`pPositive += (subMat->subMatrix[subMat->aa2num[(int)qRes]][subMat->aa2num[(int)tRes]] > 0);`
`656`	`655`	`matchCount += 1;`
`657`	`656`	`qPos++;`
`@@ -666,7 +665,6 @@ int convertalignments(int argc, const char **argv, const Command &command) {`
`666`	`665`	`break;`
`667`	`666`	`}`
`668`	`667`	`}`
`669`		`- std::cout << res.backtrace << " " << pPositive << " " << matchCount << std::endl;`
`670`	`668`	`pPositive /= static_cast<float>(matchCount);`
`671`	`669`	`}`
`672`	`670`	`result.append(SSTR(pPositive));`