From e625d4fb5e69fd513b169273b77bcf1d29d9b7c0 Mon Sep 17 00:00:00 2001 From: Maxime U Garcia Date: Thu, 26 Jun 2025 15:02:02 +0200 Subject: [PATCH] Update nextflow.config Remove `-C` no clobber option from Bash. It's causing issue with reporting metrics --- nextflow.config | 1 - 1 file changed, 1 deletion(-) diff --git a/nextflow.config b/nextflow.config index 60cc850..f5a29f7 100644 --- a/nextflow.config +++ b/nextflow.config @@ -206,7 +206,6 @@ env { // Set bash options process.shell = [ "bash", - "-C", // No clobber - prevent output redirection from overwriting files. "-e", // Exit if a tool returns a non-zero status/exit code "-u", // Treat unset variables and parameters as an error "-o", // Returns the status of the last command to exit..