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docs/usage.md

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@@ -41,8 +41,8 @@ SAMPLE3_SE,https://raw.githubusercontent.com/nf-core/test-datasets/viralrecon/il
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| Column | Description |
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| --------- | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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| `sample` | Custom sample name. This entry will be identical for multiple sequencing libraries/runs from the same sample. Spaces in sample names are automatically converted to underscores (`_`). |
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| `fastq_1` | Full path to FastQ file for Illumina short reads 1. File has to be gzipped and have the extension ".fastq.gz". |
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| `fastq_2` | Full path to FastQ file for Illumina short reads 2. File has to be gzipped and have the extension ".fastq.gz". |
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| `fastq_1` | Full path to FastQ file for Illumina short reads 1. File has to be gzipped and have the extension ".fastq.gz". |
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| `fastq_2` | Full path to FastQ file for Illumina short reads 2. File has to be gzipped and have the extension ".fastq.gz". |
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An [example samplesheet](../assets/samplesheet.csv) has been provided with the pipeline.
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