Merge pull request #40 from nf-core/bump_modules_prep_dev_to_master

PR to prepare for dev to master for release 1.0.2

Author: FloWuenne

.nf-core.yml

@@ -8,4 +8,4 @@ template:
   name: demo
   org: nf-core
   outdir: .
-  version: 1.0.2dev
+  version: 1.0.2

CHANGELOG.md

@@ -3,12 +3,6 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
-## dev
-
-### `Changed`
-
-[#34](https://github.com/nf-core/demo/pull/34) Updated the JSON schema to make input validation stricter, thus preventing more errors during the pipeline run.
-
 ## 1.0.2
 
 ### Credits
@@ -17,9 +11,17 @@ Special thanks to the following for their reviews and assistance:
 
 - [Chris Hakkaart](https://github.com/christopher-hakkaart)
 - [Marcel Ribeiro-Dantas](https://github.com/mribeirodantas)
+- [Maxime Garcia](https://github.com/maxulysse)
+- [Geraldine Van der Auwera](https://github.com/vdauwera)
+- [Florian Wuennemann](https://github.com/FloWuenne)
 
 ### Changed
 
+[#39][https://github.com/nf-core/demo/pull/39] - Remove -C from bach in nextflow.config
+[#38][https://github.com/nf-core/demo/pull/38] - Template update for nf-core/tools v3.3.1
+[#36][https://github.com/nf-core/demo/pull/36] - Template update for nf-core/tools v3.2.1
+[#34][https://github.com/nf-core/demo/pull/34] - updated nextflow_schema.json
+[#32][https://github.com/nf-core/demo/pull/32] - Minor fixes and template update
 [#29](https://github.com/nf-core/demo/pull/29) - Template update for nf-core/tools v3.2.0
 [#23](https://github.com/nf-core/demo/pull/23) - Update to latest `seqtk` and `fastqc` modules
 [#21](https://github.com/nf-core/demo/pull/21) - Template update for nf-core/tools v3.1.0

README.md

@@ -71,6 +71,8 @@ For more details about the output files and reports, please refer to the
 
 nf-core/demo was originally written by Chris Hakkaart ([@christopher-hakkaart](https://github.com/christopher-hakkaart)).
 
+The pipeline is currently being maintained by the Nextflow community team as well as [Geraldine Van der Auwera](https://github.com/vdauwera) and [Florian Wuennemann](https://github.com/FloWuenne).
+
 <!-- We thank the following people for their extensive assistance in the development of this pipeline: -->
 
 ## Contributions and Support

assets/multiqc_config.yml

@@ -1,7 +1,7 @@
 report_comment: >
-  This report has been generated by the <a href="https://github.com/nf-core/demo/tree/dev"
+  This report has been generated by the <a href="https://github.com/nf-core/demo/releases/tag/1.0.2"
   target="_blank">nf-core/demo</a> analysis pipeline. For information about how to
-  interpret these results, please see the <a href="https://nf-co.re/demo/dev/docs/output"
+  interpret these results, please see the <a href="https://nf-co.re/demo/1.0.2/docs/output"
   target="_blank">documentation</a>.
 report_section_order:
   "nf-core-demo-methods-description":

modules.json

@@ -7,17 +7,17 @@
                 "nf-core": {
                     "fastqc": {
                         "branch": "master",
-                        "git_sha": "08108058ea36a63f141c25c4e75f9f872a5b2296",
+                        "git_sha": "b1966f36ec9de31927b2603d8f499960b2a4c294",
                         "installed_by": ["modules"]
                     },
                     "multiqc": {
                         "branch": "master",
-                        "git_sha": "f0719ae309075ae4a291533883847c3f7c441dad",
+                        "git_sha": "e594e9dfaffa7572afc11bafc634984fd4cbd87b",
                         "installed_by": ["modules"]
                     },
                     "seqtk/trim": {
                         "branch": "master",
-                        "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
+                        "git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
                         "installed_by": ["modules"]
                     }
                 }