This repository was archived by the owner on Jul 28, 2025. It is now read-only.

Running Common Workflows

Jump to bottom

Adina Shanholtz edited this page Mar 15, 2023 · 2 revisions

Running Common Workflows

Run Broad Institute of MIT and Harvard's Best Practices Pipelines on Cromwell on Azure:

Data pre-processing for variant discovery

Germline short variant discovery (SNPs + Indels)

Somatic short variant discovery (SNVs + Indels)

RNAseq short variant discovery (SNPs + Indels)

Variant-filtering with Convolutional Neural Networks

Sequence data format conversion

Other WDL examples on Cromwell on Azure:

Cromwell Output Re-Organization