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2 parents efa76f2 + ef518dd commit 3c0f008Copy full SHA for 3c0f008
.github/workflows/tests.yml
@@ -17,18 +17,21 @@ jobs:
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with:
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environment-file: workflow/envs/github-actions.yml
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cache-environment: true
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+
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- name: Lint workflow
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uses: snakemake/[email protected]
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directory: .
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snakefile: workflow/Snakefile
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args: "--lint"
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- name: Run test workflow
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directory: tests/tmp
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snakefile: ../../workflow/Snakefile
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args: "--forceall --cores 2 --use-conda --conda-frontend mamba --conda-cleanup-pkgs cache --show-failed-logs --all-temp --configfile ../config/test.yaml"
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- name: Test with pytest
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shell: bash -el {0}
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run: |
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